List of publications:
  • Non-coding sequences near duplicated genes evolve rapidly D Kostka, MW Hahn and KS Pollard Genome Biology and Evolution 2010, 2, 518-33. ( doi )

  • The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity D Ritter, Q Li, D Kostka, KS Pollard, S Guo and JH Chuang Molecular Biology and Evolution 2010, advance access. ( doi )

  • Analyzing Gene Perturbation Screens With Nested Effects Models in R and Bioconductor H Fröhlich, T Beißbarth, A Tresch, D Kostka, J Jacob, R Spang and F Markowetz Bioinformatics 2008, 24, 2549-2550. ( doi )

  • Regulatory networks define phenotypic classes of human stem cell lines FJ Mueller, L Laurent, D Kostka, I Ulitsky, R Williams, C Lu, MS Rao, R Shamir, PH Schwartz, NO Schmidt and JF Loring Nature, 2008, 455, 401-105. ( doi )

  • Computational diagnostics with gene expression profiles C Lottaz, D Kostka , F Markowetz and R Spang. In Bioinformatics, J. Keith (Ed), Humana Press 2008.

  • Detecting Hierarchical Structure in Molecular Characteristics of Disease Using Transitive Approximations of Directed Graphs J Jacob, M Jentsch, D Kostka and R Spang, Bioinformatics 2008, 24, 995-1001. ( doi )

  • Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures D Kostka and R Spang, PLoS Computational Biology 2008, Feb 15, e22. ( doi )

  • Nested Effects Models for High-Dimensional Phenotyping Screens F Markowetz, D Kostka, O Troyanskaya and R Spang, Bioinformatics 2007, 23, i305-i312. ( doi )

  • A physical model for tiling array analysis HR Chung, D Kostka and M Vingron, Bioinformatics 2007, 23, i80-i86. ( doi )

  • Patient classification C Lottaz, D Kostka and R Spang. In Bioinformatics - From Genomes to Therapies, T. Lengauer (Ed), Wiley-VCH 2007.

  • Expression of Late Cell Cycle Genes and an Increased Proliferative Capacity Characterize Very Early Relapse of Childhood Acute Lymphoblastic Leukemia R Kirschner-Schwabe, C Lottaz, J Tödling, P Rhein, L Karawajew, C Eckert, A von Stackelberg, U Ungethüm, D Kostka, AE Kulozik, WD Ludwig, G Henze, R Spang, C Hagemeier and K Seeger, Clinical Cancer Research 2006, 2(15), 4553-61. ( doi )

  • Traces of Molecular Disease Mechanisms on Microarrays D Kostka, C Lottaz and R Spang In Statistische Methoden in der empirischen Forschung (ISSN 1615-4177), J. Kaufmann (Hrsg.) Schering AG (Berlin) 2005, 231-236.

  • Finding Disease Specific Alterations in the Coexpression of Genes D Kostka and R Spang, Bioinformatics 2004, 20, i194-i199. ( doi )